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PUBLICATIONS
(see also
ResearchID A-1993-2009) |
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YEAR |
REFERENCE |
DOWNLOAD |
RELATED
LINKS |
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2009 |
Varun
Mazumdar, Evan Snitkin, Salomon Amar*
and Daniel Segrè*: Metabolic network model of a human oral
pathogen, Journal
of Bacteriology (2009) Jan; 191(1), 74-90. |
[J.
Bacteriology]
[PDF]
[Cover] |
[P.
gingivalis metabolic network]
[OHMICS] |
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2008 |
Evan S. Snitkin, Aimee M. Dudley, Daniel M. Janse,
Kaisheen Wong, George M. Church, and Daniel Segrè:
Model-driven analysis of experimentally determined growth
phenotypes for 465 yeast gene deletion mutants under 16 different
conditions, Genome Biology (2008) 9:R140. |
[Genome
Biology]
[PDF]
|
[Interactive
Flux Visualization Tool] |
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2008 |
Hsuan-Chao
Chiu and Daniel Segrè: Comparative determination of biomass
composition in differentially active metabolic states, Genome
Informatics (2008) 20: 171-182. |
[PDF] |
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2008 |
William
J. Riehl and Daniel Segrè: Optimal metabolic regulation
using a constraint-based model, Genome Informatics (2008)
20: 159-170. |
[PDF] |
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2008 |
Evan S.
Snitkin and Daniel Segrè: Optimality criteria for the prediction
of metabolic fluxes in yeast mutants, Genome Informatics
(2008) 20: 123-134 . |
[PDF] |
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2007 |
Matthew A. Wright, Peter
Kharchenko, George M. Church and Daniel Segrè, Chromosomal
periodicity of evolutionarily conserved gene pairs, Proc. Natl.
Acad. Sci. USA (2007), 104 (25), 10559-10564. |
[PDF]
[PNAS online]
[Supp. Info]
|
[MSB blog]
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2007 |
Lan Hu,
Daniel Segrè and Temple F. Smith, Evolutionary changes in
gene regulation from a comparative analysis of multiple drosophila
species, Genome Informatics (2007), 18, 12-22. |
[PDF] |
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2006 |
Jason Raymond and Daniel
Segrè, The effect of oxygen on biochemical networks and the
evolution of complex life, Science (2006), 311, 1764-1767.
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[PDF]
[Science]
|
[Perspective]
[Interactive Network]
[The Scientist]
[Seed]
[La Stampa]
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2005 |
Daniel Segrè, Alexander
DeLuna, George M. Church and Roy Kishony, Modular epistasis in
yeast metabolism, Nature Genetics (2005), 37(1), 77-83.
|
[PDF]
[Nature Genetics]
|
[Data and Algorithms] |
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2005 |
Daniel Segrè, Life as a
cellular automaton, Journal of Biogeography (2005) 32, 1681.
(Review of the The Principles of
Life by Tibor Ganti) |
[PDF] |
|
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2005 |
Daniel Segrè, Ventimila geni
sotto i mari dei tropici, Darwin (2005) May-June, 56-61.
(Review, in Italian) |
[PDF] |
[Links]
|
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2004 |
Daniel Segrè, The regulatory
software of cellular metabolism, Trends in Biotechnology (2004),
22 (6), 261-265.
(Commentary of
Ihmels et al. Nat. Biotech. 2003)
|
[PDF] |
|
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2004 |
Daniel Segrè and Doron
Lancet, Theoretical and computational approaches to the study of
the origins of life, in Origins: Genesis, Evolution and Diversity
of Life (2004), COLE series, Vol.6, Kluwer, J. Seckbach (ed.)
|
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[Amazon] |
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2003 |
Daniel Segrè, Jeremy Zucker,
Jeremy Katz, Xiaoxia Lin, Patrik D'haeseleer, Wayne P. Rindone,
Peter Kharchenko, Dat Nguyen, Matthew A. Wright and George M.
Church, From annotated genomes to metabolic flux models and
kinetic parameter fitting, Omics (2003), 7(3), 301-316. |
[PDF]
|
[Biospice] |
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2002 |
Daniel Segrè, Dennis Vitkup
and George Church, Analysis of optimality in natural and perturbed
metabolic networks, Proc. Natl. Acad. Sci. USA (2002), 99(23),
15112-15117. |
[PDF]
[PNAS on line]
|
[Supplementary Material] |
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2003 |
Barak Shenhav, Daniel Segrè
and Doron Lancet, Mesobiotic emergence: molecular and ensemble
complexity in early evolution, Advances in Complex Systems (2003),
6 (1), 15-35.
|
[PDF]
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2001 |
Daniel Segrè, Barak Shenhav,
Ron Kafri and Doron Lancet, The molecular roots of compositional
inheritance, Journal of Theoretical Biology (2001), 213, 481-491.
|
[PDF]
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2001 |
Daniel Segrè, Dafna Ben-Eli,
David Deamer and Doron Lancet, The Lipid World, Origins Life Evol.
Biosphere (2001) 31, 119-145.
|
[PDF]
|
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2000 |
Yoav Gilad, Daniel Segrè,
Karl Skorecki, Michael W. Nachman, Doron Lancet and Dror Sharon,
Dichotomy of single-nucleotide polymorphism haplotypes in
olfactory receptor genes and pseudogenes, Nature Genetics (2000)
26, 221-224. |
[PDF]
|
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2000 |
Daniel Segrè, Dafna Ben-Eli
and Doron Lancet, Compositional genomes: prebiotic information
transfer in mutually catalytic noncovalent assemblies, Proc. Natl.
Acad. Sci. USA (2000), 97(8), 4112-4117. |
[PNAS on line]
[PDF]
|
[Software & extras]
|
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2000 |
Daniel Segrè and Doron
Lancet, Composing Life, EMBO Reports (2000), 1(3), 217-222. |
[PDF]
|
[cover]
|
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1999 |
Daniel Segrè and Doron
Lancet, A statistical chemistry approach to the origin of life, Chemtracts - Biochemistry and Molecular Biology (1999) 12 (6),
382-397. |
[preprint PDF]
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2000 |
Daniel Segrè, Dafna Ben-Eli
and Doron Lancet, Prebiotic evolution of amphiphilic assemblies
far from equilibrium: from compositional information to
sequence-based biopolymers, Astronomical Society of the Pacific
Conference Series Vol.213, Sheridan Books, Michigan, 2000, 373-378
|
[preprint PDF]
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1998 |
Daniel Segrè , Doron Lancet,
Ora Kedem and Yitzhak Pilpel, Graded Autocatalysis Replication
Domain (GARD): kinetic analysis of self-replication in mutually
catalytic sets, Origins Life Evol. Biosphere (1998) Vol.28,
501-514.
|
[PDF]
[Medline abstract]
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1998 |
Daniel Segrè, Yitzhak Pilpel
and Doron Lancet, Mutual catalysis in sets of prebiotic organic
molecules: Evolution through computer simulated chemical kinetics,
Physica A (1998) 249, 558-564.
|
[PDF]
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1999 |
Daniel Segrè, Dafna Ben-Eli,
Yitzhak Pilpel, Ora Kedem and Doron Lancet, GARDobes: Primordial
cell nano-precursors with organic catalysis, compositional genome
and capacity to evolve, In Instruments, Methods, and Missions for
Astrobiology II, Richard B. Hoover, Ed., Proceedings of SPIE,
Vol.3755, 144-162 (1999) |
[PDF(5M)]
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1998 |
Daniel Segrè and Doron
Lancet, Mutually catalytic amphiphiles: simulated chemical
evolution and implications to exobiology, J.Chela-Flores and
F.Raulin (eds), Exobiology: Matter, Energy and Information in the
Origin and Evolution of Life in the Universe, 123-131, Kluwer
Academic Publishers, The Netherlands, 1998. |
[preprint PDF]
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1997 |
Daniel Segrè, Yitzhak Pilpel,
Gustavo Glusman and Doron Lancet, Self-replication and evolution
in primordial mutually catalytic set, in C. B. Cosmovici, S.
Bowyer, D. Werthimer, Astronomical and Biochemical Origins and the
Search for Life in the Universe, Editrice Compositori, Bologna,
1997, 469-476 |
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